Scientific Publications
Impactful translational research by the Beacon team.
Using a Large Control Cohort to Benchmark EEG Spectral Abnormalities in SCN2A Developmental And Epileptic Encephalopathy
Melina TsitsiklisAES, 2023
Machine Learning Algorithm Matches Experts in Identifying Interictal Ictal Injury Continuum EEG Pattern
Franz FürbassAES, 2023
Association Between Antiseizure Medication Burden and EEG Spectral Features in SCN2A Developmental and Epileptic Encephalopathy
Jay PathmanathanAES, 2023
A Novel Relationship between Interictal Epileptiform Discharge Burden and Gross Motor Developmental Delay in SCN2A Developmental and Epileptic Encephalopathy
Michelle FogersonAES, 2023
Effect of Daridorexant on Sleep Architecture in Adult Patients with Insomnia Disorder—An Analysis of Two Pooled Phase 3 Studies
World Sleep
This analysis aims to assess if daridorexant, a dual orexin receptor antagonist, preserves or modifies sleep architecture, with specific focus on hyperarousal-related patterns such as elevated fast frequencies and disrupted sleep continuity using pooled data from two phase 3 studies.
The Dreem Headband compared to polysomnography for electroencephalographic signal acquisition and sleep staging
Pierrick Arnal, Ph.DSleep
The aim of this study was to assess the signal acquisition and the performance of the automatic sleep staging algorithms of a reduced-montage dry-electroencephalographic (EEG) device (Dreem headband, DH) compared to the gold-standard polysomnography (PSG) scored by five sleep experts.
Macro and microarchitectural sleep features in Alzheimer’s dementia and mild cognitive impairment in a large clinical cohort
Jay Pathmanathan, MD PhDAAIC
We conducted a preliminary examination of polysomnographic (PSG) macro- and microarchitectural changes in subjects with Alzheimer’s Dementia (AD) and mild cognitive impairment (MCI) in a large retrospective cohort.
Machine learning-enabled epileptiform discharge detection stratifies patient subpopulations with Alzheimer’s disease
Jay Pathmanathan, MD PhDAAIC
Interictal epileptiform discharges (IEDs) are detectable in routine EEGs from patients with Alzheimer’s Dementia or MCI (with or without epilepsy). IEDs in these patients can be reliably and quickly detected on routine EEGs using ML algorithms, enabling rapid patient characterization.
Robustness of a Deep Neural Network Epileptiform Discharge Detector to Missing Channels in EEG
Beacon BiosignalsAES
Machine learning models for detection of IEDs are improving to the point of matching expert human performance. We demonstrate robustness of our IED detector to real-world scenarios which enables biomarker evaluation for clinical trials and neurodiagnostics.
Spectral analysis of PSG recordings in insomnia and non-insomnia subjects
Idorsia Pharmaceuticals and Beacon Biosignals
Spectral analysis allows the quantification of sleep measured by EEG by dissecting the signals into power frequency bands
A Phase 1 Translational Pharmacology Study in Healthy Elderly Volunteers Evaluating the Safety, Tolerability, Pharmacokinetics, and CNS Activity of CY6463*, a CNS-penetrant, Soluble Guanylate Cyclase (sGC) Stimulator
Cyclerion Therapeutics and Beacon Biosignals
A Phase 1 Translational Pharmacology Study in Healthy Elderly Volunteers Evaluating the Safety, Tolerability, Pharmacokinetics, and CNS Activity of CY6463*, a CNS-penetrant, Soluble Guanylate Cyclase (sGC) Stimulator
Optimal spindle detection parameters for predicting cognitive performance
Brandon Westover, MD PhDSleep
Our exploration of spindle detection parameters identified optimal parameters for studies of fluid cognition and revealed the role of parameter interactions for both slow and fast spindles. Our findings support sleep spindles as a sleep-based biomarker of fluid cognition.
Deep active learning for interictal ictal injury continuum EEG patterns
Brandon Westover, MD PhDJ Neurosci Methods
Developed a method based on embedding maps to create high quality pseudo labels to enhance the training of machine learning models. Our results provide guidance regarding the use of AL to efficiently label large EEG datasets in critically ill patients.
Automated annotation of epileptiform burden and its association with outcomes
Brandon Westover, MD PhDAnn Neurol.
Automated measurement of peak epileptiform activity burden affords a convenient, consistent, and quantifiable target for future multicenter randomized trials investigating whether suppressing epileptiform activity improves outcomes.
Association of an Electroencephalography-Based Risk Score With Seizure Probability in Hospitalized Patients
Brandon Westover, MD PhDJAMA Neurology
The 2HELPS2B model is a quick accurate tool to aid clinical judgment of the risk of seizures in critically ill patients.
The generation and propagation of the human alpha rhythm
Syd Cash, MD PhDPNAS
These findings shed light on how the human alpha rhythm coordinates activity throughout the brain.
Seizure onset location shapes dynamics of initiation
Syd Cash, MD PhDClinical Neurophysiology
The onset region sculpts neurodynamics at seizure initiation and that unique features of the cytoarchitecture and/or connectivity of that region play a significant role in determining seizure mechanism.
Searching and mining trillions of time series subsequences under dynamic time warping
Brandon Westover, MD PhDKDD Proceedings
Our ideas allow us to solve higher-level time series data mining problem such as motif discovery and clustering at scales that would otherwise be untenable.
Reactivation of Motor-Related Gamma Activity in Human NREM Sleep
Syd Cash, MD PhDFrontiers in Neuroscience
Replay occurs in NREM sleep of the neural activity related to previous waking experience, i.e. that a basic tenet of the reactivation theory does occur in human sleep.
Randomized trial of lacosamide vs. fosphenytoin for nonconvulsive seizures
Brandon Westover, MD PhDAnnals of Neurology
LCM was noninferior to fPHT in controlling NCS, and treatment emergent adverse events were comparable.
Expert-level sleep scoring with deep neural networks
Brandon Westover, MD PhDJAMIA
Deep neural networks, which have recently achieved expert-level performance for other complex medical tasks, are ideally suited to PSG scoring, given sufficient training data.
Excess brain age in the sleep electroencephalogram predicts reduced life expectancy
Brandon WestoverNeurobiology of Aging
BAI, a sleep EEG-based biomarker of the deviation of sleep microstructure from patterns normal for age, is an independent predictor of life expectancy.
CLARA: Clinical Report Auto-completion
Brandon Westover, MD PhDWWW Proceedings
An interactive method that generates EEG reports in a sentence by sentence fashion based on doctors’ anchor words and partially completed sentences.
Brain age from the electroencephalogram of sleep
Brandon Westover, MD PhDNeurobiology of Aging
The findings raise the prospect of using the sleep EEG as a potential biomarker for healthy brain aging.
Artificial Intelligence in sleep medicine: background and implications for clinicians
Brandon Westover, MD PhDJ Clin Sleep Med
When harnessed appropriately in conjunction with human expertise, AI will improve the practice of sleep medicine and further sleep science for the health and well-being of our patients.
Association of epileptiform abnormalities and seizures in Alzheimer disease
Syd Cash, MD PhDNeurology
Epileptiform abnormalities are common in AD but not all equivalent. This may represent a sign of hyperexcitability in a subpopulation of these patients.
Neural effects of propofol-induced unconsciousness and its reversal using thalamic stimulation
Jacob Donoghue, MD PhDeLife
Unconsciousness is linked to cortical and thalamic slow frequency synchrony coupled with decreased spiking, and loss of higher-frequency dynamics. This may disrupt cortical communication/integration.
Single-neuron dynamics in human focal epilepsy
Jacob Donoghue, MD PhDNature Neuroscience
This is the first study of large ensembles of single neurons during seizures in persons with epilepsy. Contrary to the traditional view, neuronal spiking activity during seizures was highly heterogeneous and changed significantly preceding clinical onset.
Light affects mood and learning through distinct retina-brain pathways
Michelle Fogerson, PhDCell
These results provide new insights into the neural basis required for light to influence mood & learning.
Interhemispheric transfer of working memories
Jacob Donoghue, MD PhDNeuron
We studied how WM is integrated across hemifields by recording neural activity bilaterally from prefrontal cortex. Around the time of transfer, synchrony between the two prefrontal hemispheres peaked in theta and beta frequencies, with a directionality consistent with memory trace transfer. This illustrates how the two cortical hemispheres can stitch together WM traces across visual hemifields.
A hidden Markov model reliably characterizes ketamine-induced spectral dynamics in macaque local field potentials and human EEGs
Jacob Donoghue, MD PhDPLoS Computational Biology
Ketamine is an NMDA receptor antagonist commonly used to maintain general anesthesia. At anesthetic doses, ketamine causes high power gamma (25-50 Hz) oscillations alternating with slow-delta (0.1-4 Hz) oscillations. These dynamics are readily observed in local field potentials (LFPs) of non-human primates (NHPs) and electroencephalogram (EEG) recordings from human subjects. Here, we characterize ketamine’s neural dynamics using a hidden Markov model (HMM).
Large-scale automated sleep staging
Brandon Westover, MD PhDSleep
Training with a large data set enables automated sleep staging that compares favorably with human scorers. Because testing was performed on a large and heterogeneous data set, the performance estimate has low variance and is likely to generalize broadly.
Interrater Reliability of Experts in Identifying Interictal Epileptiform Discharges in EEGs
Brandon Westover, MD PhDJAMA Neurology
This study’s findings suggest that experts can identify whether EEGs contain IEDs with substantial reliability. Lower reliability regarding individual IEDs may be largely explained by various experts applying different thresholds to a common underlying statistical model.
Association of Sleep EEG-Based Brain Age Index With Dementia
Brandon Westover, MD PhDJAMA Network Open
The brain age index may be a useful biomarker associated with dementia and could have utility as a screening tool for the presence of underlying neurodegenerative disease and monitoring of disease progression.